GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Macuminata_Ma01_g04170 [ Ma01_g04170]	CAJGYN010000001.1	2696524	2702789	v2	Musa acuminata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Macuminata_Ma01_t04170.1 Ma01_t04170.1	High	No	725	OG0051880		Get ORF Coding potential... Type: noncoding Potential: -0.805 Folding energies... MFEI: -28.703 AMFE: -0.636 GC content %: 45.103
Macuminata_Ma01_t04170.2 Ma01_t04170.2	High	No	759	OG0051880		Get ORF Coding potential... Type: noncoding Potential: -0.817 Folding energies... MFEI: -29.433 AMFE: -0.648 GC content %: 45.455

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).