GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Macuminata_Ma01_g07000 [ Ma01_g07000]	CAJGYN010000001.1	5059098	5060730	v2	Musa acuminata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Macuminata_Ma01_t07000.1 Ma01_t07000.1	High	No	486	OG0051882		Get ORF Coding potential... Type: noncoding Potential: -0.791 Folding energies... MFEI: -29.218 AMFE: -0.555 GC content %: 52.675
Macuminata_Ma01_t07000.2 Ma01_t07000.2	High	No	581	OG0051882		Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -26.730 AMFE: -0.534 GC content %: 50.086

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).