Macuminata Ma02 g20190
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Macuminata_Ma02_g20190 [ Ma02_g20190] |
CAJGYN010000002.1 | 26218747 | 26249784 | v2 | Musa acuminata (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Macuminata_Ma02_t20190.1 Ma02_t20190.1 |
High | No | 594 | OG0019891 | Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -31.515 AMFE: -0.650 GC content %: 48.485 | |
| Macuminata_Ma02_t20190.2 Ma02_t20190.2 |
High | No | 722 | OG0019891 | Get ORF Coding potential... Type: noncoding Potential: -1.103 Folding energies... MFEI: -31.454 AMFE: -0.634 GC content %: 49.584 | |
| Macuminata_Ma02_t20190.3 Ma02_t20190.3 |
High | No | 614 | OG0019891 | Get ORF Coding potential... Type: noncoding Potential: -1.348 Folding energies... MFEI: -31.515 AMFE: -0.647 GC content %: 48.697 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
