GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Macuminata_Ma08_g05070 [ Ma08_g05070]	CAJGYN010000008.1	3472474	3475934	v2	Musa acuminata (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Macuminata_Ma08_t05070.1 Ma08_t05070.1	High	No	621	OG0051929		Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -31.771 AMFE: -0.683 GC content %: 46.538
Macuminata_Ma08_t05070.2 Ma08_t05070.2	High	No	419	OG0051929		Get ORF Coding potential... Type: noncoding Potential: -0.856 Folding energies... MFEI: -31.981 AMFE: -0.626 GC content %: 51.074

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).