Macuminata Ma08 g14780
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Macuminata_Ma08_g14780 [ Ma08_g14780] |
CAJGYN010000008.1 | 14722164 | 14729078 | v2 | Musa acuminata (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Macuminata_Ma08_t14780.1 Ma08_t14780.1 |
Low | No | 1425 | OG0008588 | Get ORF Coding potential... Type: noncoding Potential: -0.952 Folding energies... MFEI: -30.912 AMFE: -0.656 GC content %: 47.088 | |
| Macuminata_Ma08_t14780.2 Ma08_t14780.2 |
Low | No | 734 | OG0008588 | Get ORF Coding potential... Type: noncoding Potential: -0.783 Folding energies... MFEI: -26.485 AMFE: -0.655 GC content %: 40.463 | |
| Macuminata_Ma08_t14780.3 Ma08_t14780.3 |
Low | No | 807 | OG0008588 | Get ORF Coding potential... Type: noncoding Potential: -0.809 Folding energies... MFEI: -27.014 AMFE: -0.659 GC content %: 41.016 | |
| Macuminata_Ma08_t14780.4 Ma08_t14780.4 |
Low | No | 485 | OG0008588 | Get ORF Coding potential... Type: noncoding Potential: -0.745 Folding energies... MFEI: -24.124 AMFE: -0.613 GC content %: 39.381 | |
| Macuminata_Ma08_t14780.5 Ma08_t14780.5 |
Low | No | 1279 | OG0008588 | Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -31.048 AMFE: -0.647 GC content %: 48.006 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Macuminata_Ma08_t14780.2 | SwissProt | 2021-04-01 | Q54YW1 | 2.37e-7 |
| Macuminata_Ma08_t14780.3 | SwissProt | 2021-04-01 | Q54YW1 | 3.35e-7 |
| Macuminata_Ma08_t14780.4 | SwissProt | 2021-04-01 | Q54YW1 | 3.36e-8 |
| Macuminata_Ma08_t14780.5 | SwissProt | 2021-04-01 | Q54YW1 | 1.65e-6 |
| Macuminata_Ma08_t14780.4 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Gypsy | |
| Macuminata_Ma08_t14780.1 | SwissProt | 2021-04-01 | Q54YW1 | 2.45e-6 |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
