Mesculenta Manes.01G001951

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Mesculenta_Manes.01G001951
[ Manes.01G001951]
Chromosome01 1565220 1566667 v8.1 Manihot esculenta (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Mesculenta_Manes.01G001951.1
Manes.01G001951.1
High No 1448 OG0211737
Coding potential...
Type: noncoding Potential: -0.964
Folding energies...
MFEI: -20.870 AMFE: -0.644
GC content
%: 32.390


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Mesculenta_Manes.01G001951.png