Mesculenta Manes.01G042100
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Mesculenta_Manes.01G042100 [ Manes.01G042100] |
Chromosome01 | 8340464 | 8344887 | v8.1 | Manihot esculenta (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Mesculenta_Manes.01G042100.10 Manes.01G042100.10 |
High | No | 318 | OG0004186 | Get ORF Coding potential... Type: noncoding Potential: -0.275 Folding energies... MFEI: -22.201 AMFE: -0.556 GC content %: 39.937 | |
| Mesculenta_Manes.01G042100.2 Manes.01G042100.2 |
High | No | 1241 | OG0004186 | Get ORF Coding potential... Type: noncoding Potential: -0.610 Folding energies... MFEI: -22.305 AMFE: -0.574 GC content %: 38.840 | |
| Mesculenta_Manes.01G042100.3 Manes.01G042100.3 |
High | No | 1257 | OG0004186 | Get ORF Coding potential... Type: noncoding Potential: -0.612 Folding energies... MFEI: -21.806 AMFE: -0.630 GC content %: 34.606 | |
| Mesculenta_Manes.01G042100.4 Manes.01G042100.4 |
High | No | 1146 | OG0004186 | Get ORF Coding potential... Type: noncoding Potential: -0.592 Folding energies... MFEI: -22.234 AMFE: -0.582 GC content %: 38.220 | |
| Mesculenta_Manes.01G042100.7 Manes.01G042100.7 |
High | No | 1347 | OG0004186 | Get ORF Coding potential... Type: noncoding Potential: -0.626 Folding energies... MFEI: -21.633 AMFE: -0.579 GC content %: 37.342 | |
| Mesculenta_Manes.01G042100.8 Manes.01G042100.8 |
High | No | 1344 | OG0004186 | Get ORF Coding potential... Type: noncoding Potential: -0.626 Folding energies... MFEI: -21.622 AMFE: -0.579 GC content %: 37.351 | |
| Mesculenta_Manes.01G042100.9 Manes.01G042100.9 |
High | No | 1247 | OG0004186 | Get ORF Coding potential... Type: noncoding Potential: -0.611 Folding energies... MFEI: -21.820 AMFE: -0.590 GC content %: 36.969 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
