GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Mesculenta_Manes.06G162100 [ Manes.06G162100]	Chromosome06	28959238	28961500	v8.1	Manihot esculenta (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Mesculenta_Manes.06G162100.1 Manes.06G162100.1	High	No	342	OG0051407		Get ORF Coding potential... Type: noncoding Potential: -0.546 Folding energies... MFEI: -21.842 AMFE: -0.526 GC content %: 41.520
Mesculenta_Manes.06G162100.2 Manes.06G162100.2	High	No	1571	OG0051407		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -23.966 AMFE: -0.623 GC content %: 38.447

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).