GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Mesculenta_Manes.07G066700 [ Manes.07G066700]	Chromosome07	12619245	12624123	v8.1	Manihot esculenta (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Mesculenta_Manes.07G066700.1 Manes.07G066700.1	High	No	726	OG0051412		Get ORF Coding potential... Type: noncoding Potential: -1.184 Folding energies... MFEI: -24.490 AMFE: -0.526 GC content %: 46.556
Mesculenta_Manes.07G066700.2 Manes.07G066700.2	High	No	684	OG0051412		Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -24.722 AMFE: -0.532 GC content %: 46.491

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).