GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Mesculenta_Manes.08G136850 [ Manes.08G136850]	Chromosome08	37365041	37365981	v8.1	Manihot esculenta (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Mesculenta_Manes.08G136850.1 Manes.08G136850.1	High	No	792	OG0019799		Get ORF Coding potential... Type: noncoding Potential: -0.899 Folding energies... MFEI: -24.798 AMFE: -0.668 GC content %: 37.121
Mesculenta_Manes.08G136850.2 Manes.08G136850.2	High	No	693	OG0019799		Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -24.084 AMFE: -0.657 GC content %: 36.652
Mesculenta_Manes.08G136850.3 Manes.08G136850.3	High	No	715	OG0019799		Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -24.853 AMFE: -0.676 GC content %: 36.783

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).