GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Mesculenta_Manes.11G028500 [ Manes.11G028500]	Chromosome11	2743549	2745385	v8.1	Manihot esculenta (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Mesculenta_Manes.11G028500.2 Manes.11G028500.2	High	No	1135	OG0051445		Get ORF Coding potential... Type: noncoding Potential: -0.461 Folding energies... MFEI: -23.753 AMFE: -0.637 GC content %: 37.269
Mesculenta_Manes.11G028500.3 Manes.11G028500.3	High	No	653	OG0051445		Get ORF Coding potential... Type: noncoding Potential: -0.514 Folding energies... MFEI: -25.850 AMFE: -0.657 GC content %: 39.357

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).