GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Mesculenta_Manes.13G025000 [ Manes.13G025000]	Chromosome13	3377906	3379524	v8.1	Manihot esculenta (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Mesculenta_Manes.13G025000.5 Manes.13G025000.5	High	No	1004	OG0013502		Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -22.371 AMFE: -0.651 GC content %: 34.363
Mesculenta_Manes.13G025000.6 Manes.13G025000.6	High	No	1003	OG0013502		Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -22.542 AMFE: -0.653 GC content %: 34.497
Mesculenta_Manes.13G025000.8 Manes.13G025000.8	High	No	1052	OG0013502		Get ORF Coding potential... Type: noncoding Potential: -0.596 Folding energies... MFEI: -22.538 AMFE: -0.643 GC content %: 35.076
Mesculenta_Manes.13G025000.9 Manes.13G025000.9	High	No	1049	OG0013502		Get ORF Coding potential... Type: noncoding Potential: -0.637 Folding energies... MFEI: -22.526 AMFE: -0.644 GC content %: 34.986

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).