GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Mesculenta_Manes.13G034200 [ Manes.13G034200]	Chromosome13	4210497	4211265	v8.1	Manihot esculenta (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Mesculenta_Manes.13G034200.1 Manes.13G034200.1	High	No	644	OG0051466		Get ORF Coding potential... Type: noncoding Potential: -0.758 Folding energies... MFEI: -24.286 AMFE: -0.649 GC content %: 37.422
Mesculenta_Manes.13G034200.2 Manes.13G034200.2	High	No	641	OG0051466		Get ORF Coding potential... Type: noncoding Potential: -0.743 Folding energies... MFEI: -23.822 AMFE: -0.636 GC content %: 37.441

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).