GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Mesculenta_Manes.14G139900 [ Manes.14G139900]	Chromosome14	12257493	12260347	v8.1	Manihot esculenta (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Mesculenta_Manes.14G139900.3 Manes.14G139900.3	High	No	747	OG0019812		Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -23.481 AMFE: -0.615 GC content %: 38.153
Mesculenta_Manes.14G139900.6 Manes.14G139900.6	High	No	973	OG0019812		Get ORF Coding potential... Type: noncoding Potential: -1.089 Folding energies... MFEI: -23.834 AMFE: -0.612 GC content %: 38.952
Mesculenta_Manes.14G139900.7 Manes.14G139900.7	High	No	959	OG0019812		Get ORF Coding potential... Type: noncoding Potential: -1.087 Folding energies... MFEI: -24.234 AMFE: -0.620 GC content %: 39.103

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).