Mpolymorpha Mapoly0001s0060

From GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

[ Mapoly0001s0060]
scaffold_1 708671 709006 v3.1 Marchantia polymorpha (Phytozome 13)

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Low Yes 336 OG0213721
Coding potential...
Type: noncoding Potential: -1.034
Folding energies...
MFEI: -35.804 AMFE: -0.608
GC content
%: 58.929

Matches to external databases

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Mpolymorpha_Mapoly0001s0060.1  Rfam 14.6 mir-1227 0.0061
Mpolymorpha_Mapoly0001s0060.1  RepBase (RepeatMasker) 2014-01-31 LTR/Gypsy

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).