Mpolymorpha Mapoly0001s0088

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Mpolymorpha_Mapoly0001s0088
[ Mapoly0001s0088]
scaffold_1 968439 970640 v3.1 Marchantia polymorpha (Phytozome 13)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Mpolymorpha_Mapoly0001s0088.1
Mapoly0001s0088.1
High No 1886 OG0213726
Coding potential...
Type: noncoding Potential: -1.124
Folding energies...
MFEI: -27.248 AMFE: -0.604
GC content
%: 45.122


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Mpolymorpha_Mapoly0001s0088.png