Mpolymorpha Mapoly0001s0352

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Mpolymorpha_Mapoly0001s0352
[ Mapoly0001s0352]
scaffold_1 3834427 3835616 v3.1 Marchantia polymorpha (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Mpolymorpha_Mapoly0001s0352.1
Mapoly0001s0352.1
Low Yes 1190 OG0213753
Coding potential...
Type: noncoding Potential: -1.323
Folding energies...
MFEI: -33.924 AMFE: -0.709
GC content
%: 47.815


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Mpolymorpha_Mapoly0001s0352.1  Rfam 14.6 MIR1846 0.0039


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Mpolymorpha_Mapoly0001s0352.png