GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Mtruncatula_MTR_2g080270 [ MTR_2g080270]	2	33883039	33886037	v4	Medicago truncatula (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Mtruncatula_KEH38808 KEH38808	High	No	767	OG0019885		Get ORF Coding potential... Type: noncoding Potential: -0.489 Folding energies... MFEI: -26.010 AMFE: -0.663 GC content %: 39.244
Mtruncatula_KEH38809 KEH38809	High	No	219	OG0223852		Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -26.895 AMFE: -0.535 GC content %: 50.228
Mtruncatula_KEH38810 KEH38810	High	No	1338	OG0019885		Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -23.677 AMFE: -0.660 GC content %: 35.874
Mtruncatula_KEH38811 KEH38811	High	No	1273	OG0019885		Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -23.716 AMFE: -0.669 GC content %: 35.428

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).