Mtruncatula MTR 3g014705
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Mtruncatula_MTR_3g014705 [ MTR_3g014705] |
3 | 4230027 | 4240072 | v4 | Medicago truncatula (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Mtruncatula_AES68773 AES68773 |
High | No | 405 | OG0217214 | Get ORF Coding potential... Type: noncoding Potential: -0.957 Folding energies... MFEI: -19.556 AMFE: -0.701 GC content %: 27.901 | |
| Mtruncatula_KEH33010 KEH33010 |
High | No | 444 | OG0222970 | Get ORF Coding potential... Type: noncoding Potential: -1.039 Folding energies... MFEI: -18.378 AMFE: -0.703 GC content %: 26.126 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
