GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Mtruncatula_MTR_3g053770 [ MTR_3g053770]	3	16849029	16850024	v4	Medicago truncatula (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Mtruncatula_AES70403 AES70403	High	No	354	OG0019863		Get ORF Coding potential... Type: noncoding Potential: -0.486 Folding energies... MFEI: -26.130 AMFE: -0.617 GC content %: 42.373
Mtruncatula_KEH33619 KEH33619	High	No	270	OG0019863		Get ORF Coding potential... Type: noncoding Potential: -0.665 Folding energies... MFEI: -22.259 AMFE: -0.527 GC content %: 42.222
Mtruncatula_KEH33620 KEH33620	High	No	324	OG0019863		Get ORF Coding potential... Type: noncoding Potential: -0.621 Folding energies... MFEI: -22.160 AMFE: -0.536 GC content %: 41.358

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).