Mtruncatula MTR 4g031970

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Mtruncatula_MTR_4g031970
[ MTR_4g031970]
4 11011958 11012924 v4 Medicago truncatula (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Mtruncatula_AES87673
AES87673
Low No 312 OG0218592
Coding potential...
Type: noncoding Potential: -0.190
Folding energies...
MFEI: -26.154 AMFE: -0.703
GC content
%: 37.179


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Mtruncatula_AES87673  RepBase (RepeatMasker) 2014-01-31 LTR/Copia


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Mtruncatula_MTR_4g031970.png