Mtruncatula MTR 6g015345

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Mtruncatula_MTR_6g015345
[ MTR_6g015345]
6 5009528 5010309 v4 Medicago truncatula (Ensembl Plants 51)
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Mtruncatula_KEH25065
KEH25065
Low Yes 303 OG0221745
Coding potential...
Type: noncoding Potential: -0.689
Folding energies...
MFEI: -28.317 AMFE: -0.645
GC content
%: 43.894


Matches to external databases
Help.png

The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Mtruncatula_KEH25065  Rfam 14.6 mir-128 0.0042


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Mtruncatula_MTR_6g015345.png