Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Nattenuata_A4A49_01551 [ A4A49_01551] |
scaffold00428 | 388064 | 389830 | r2 | Nicotiana attenuata (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Nattenuata_OIT36481 OIT36481 |
Low | No | 740 | OG0229112 | Get ORF Coding potential... Type: noncoding Potential: -0.280 Folding energies... MFEI: -21.108 AMFE: -0.615 GC content %: 34.324 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Nattenuata_OIT36481 | RepBase (RepeatMasker) | 2014-01-31 | DNA/hAT-Ac; LTR/Copia |