Ncolorata Nycol.A00590
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Ncolorata_Nycol.A00590 [ Nycol.A00590] |
GWHAAYW00000001 | 10242892 | 10253872 | v1.2 | Nymphaea colorata (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Ncolorata_Nycol.A00590.1 Nycol.A00590.1 |
High | No | 231 | OG0013571 | Get ORF Coding potential... Type: noncoding Potential: -0.668 Folding energies... MFEI: -31.299 AMFE: -0.629 GC content %: 49.784 | |
| Ncolorata_Nycol.A00590.2 Nycol.A00590.2 |
High | No | 210 | OG0013571 | Get ORF Coding potential... Type: noncoding Potential: -0.730 Folding energies... MFEI: -30.667 AMFE: -0.608 GC content %: 50.476 | |
| Ncolorata_Nycol.A00590.3 Nycol.A00590.3 |
High | No | 228 | OG0013571 | Get ORF Coding potential... Type: noncoding Potential: -0.649 Folding energies... MFEI: -29.518 AMFE: -0.601 GC content %: 49.123 | |
| Ncolorata_Nycol.A00590.4 Nycol.A00590.4 |
High | No | 225 | OG0013571 | Get ORF Coding potential... Type: noncoding Potential: -0.517 Folding energies... MFEI: -37.467 AMFE: -0.680 GC content %: 55.111 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
