Ncolorata Nycol.A02520
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Ncolorata_Nycol.A02520 [ Nycol.A02520] |
GWHAAYW00000001 | 32858673 | 32871992 | v1.2 | Nymphaea colorata (Phytozome 13) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Ncolorata_Nycol.A02520.1 Nycol.A02520.1 |
High | No | 702 | OG0004200 | Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -29.046 AMFE: -0.601 GC content %: 48.291 | |
| Ncolorata_Nycol.A02520.2 Nycol.A02520.2 |
High | No | 545 | OG0004200 | Get ORF Coding potential... Type: noncoding Potential: -0.779 Folding energies... MFEI: -29.743 AMFE: -0.603 GC content %: 49.358 | |
| Ncolorata_Nycol.A02520.3 Nycol.A02520.3 |
High | No | 662 | OG0004200 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -29.924 AMFE: -0.615 GC content %: 48.640 | |
| Ncolorata_Nycol.A02520.4 Nycol.A02520.4 |
High | No | 672 | OG0004200 | Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -29.881 AMFE: -0.610 GC content %: 48.958 | |
| Ncolorata_Nycol.A02520.5 Nycol.A02520.5 |
High | No | 575 | OG0004200 | Get ORF Coding potential... Type: noncoding Potential: -0.795 Folding energies... MFEI: -28.974 AMFE: -0.597 GC content %: 48.522 | |
| Ncolorata_Nycol.A02520.6 Nycol.A02520.6 |
High | No | 692 | OG0004200 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -29.075 AMFE: -0.606 GC content %: 47.977 | |
| Ncolorata_Nycol.A02520.7 Nycol.A02520.7 |
High | No | 660 | OG0004200 | Get ORF Coding potential... Type: noncoding Potential: -0.834 Folding energies... MFEI: -29.333 AMFE: -0.607 GC content %: 48.333 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
