GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Ncolorata_Nycol.A03234 [ Nycol.A03234]	GWHAAYW00000001	39778122	39779590	v1.2	Nymphaea colorata (Phytozome 13)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Ncolorata_Nycol.A03234.1 Nycol.A03234.1	High	No	1201	OG0019954		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -28.843 AMFE: -0.625 GC content %: 46.128
Ncolorata_Nycol.A03234.2 Nycol.A03234.2	High	No	918	OG0019954		Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -28.366 AMFE: -0.611 GC content %: 46.405
Ncolorata_Nycol.A03234.3 Nycol.A03234.3	High	No	758	OG0019954		Get ORF Coding potential... Type: noncoding Potential: -0.745 Folding energies... MFEI: -29.842 AMFE: -0.632 GC content %: 47.230

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).