GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Ncolorata_Nycol.K00292 [ Nycol.K00292]	GWHAAYW00000011	4370244	4381988	v1.2	Nymphaea colorata (Phytozome 13)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Ncolorata_Nycol.K00292.1 Nycol.K00292.1	High	No	1463	OG0019981		Get ORF Coding potential... Type: noncoding Potential: -1.127 Folding energies... MFEI: -26.917 AMFE: -0.648 GC content %: 41.558
Ncolorata_Nycol.K00292.2 Nycol.K00292.2	High	No	884	OG0019981		Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -28.643 AMFE: -0.619 GC content %: 46.267
Ncolorata_Nycol.K00292.3 Nycol.K00292.3	High	No	813	OG0019981		Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -28.229 AMFE: -0.604 GC content %: 46.740

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).