Obarthii ENSRNA049466574

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Obarthii_ENSRNA049466574
[ ENSRNA049466574]
12 4699745 4699961 v1 Oryza barthii (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Obarthii_ENSRNA049466574-T1
ENSRNA049466574-T1
Low Yes 217 OG0020026
Coding potential...
Type: noncoding Potential: -0.919
Folding energies...
MFEI: -45.300 AMFE: -1.003
GC content
%: 45.161


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Obarthii_ENSRNA049466574-T1  Rfam 14.6 MIR444 8.7e-8


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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