Obarthii OBART01G00890

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Obarthii_OBART01G00890
[ OBART01G00890]
1 541516 542449 v1 Oryza barthii (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Obarthii_OBART01G00890.1
OBART01G00890.1
High No 336 OG0239936
Coding potential...
Type: noncoding Potential: -0.709
Folding energies...
MFEI: -43.036 AMFE: -0.648
GC content
%: 66.369


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Obarthii_OBART01G00890.png