Obarthii OBART01G11350
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Obarthii_OBART01G11350 [ OBART01G11350] |
1 | 8709776 | 8714634 | v1 | Oryza barthii (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Obarthii_OBART01G11350.2 OBART01G11350.2 |
High | No | 716 | OG0240012 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -32.249 AMFE: -0.457 GC content %: 70.531 | |
| Obarthii_OBART01G11350.3 OBART01G11350.3 |
High | No | 615 | OG0240013 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -31.789 AMFE: -0.446 GC content %: 71.220 | |
| Obarthii_OBART01G11350.4 OBART01G11350.4 |
High | No | 552 | OG0240014 | Get ORF Coding potential... Type: noncoding Potential: -1.143 Folding energies... MFEI: -32.246 AMFE: -0.427 GC content %: 75.543 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
