GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Obarthii_OBART01G14990 [ OBART01G14990]	1	12076477	12084441	v1	Oryza barthii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Obarthii_OBART01G14990.1 OBART01G14990.1	High	No	249	OG0240049		Get ORF Coding potential... Type: noncoding Potential: -0.758 Folding energies... MFEI: -32.651 AMFE: -0.621 GC content %: 52.610
Obarthii_OBART01G14990.2 OBART01G14990.2	High	No	597	OG0052419		Get ORF Coding potential... Type: noncoding Potential: -0.739 Folding energies... MFEI: -29.514 AMFE: -0.506 GC content %: 58.291
Obarthii_OBART01G14990.3 OBART01G14990.3	High	No	489	OG0052419		Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -29.489 AMFE: -0.490 GC content %: 60.123

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).