Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Obarthii_OBART01G16600 [ OBART01G16600] |
1 | 13977066 | 13980139 | v1 | Oryza barthii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Obarthii_OBART01G16600.1 OBART01G16600.1 |
Low | No | 1325 | OG0004212 | Get ORF Coding potential... Type: noncoding Potential: -1.004 Folding energies... MFEI: -28.838 AMFE: -0.555 GC content %: 52.000 | |
Obarthii_OBART01G16600.2 OBART01G16600.2 |
Low | No | 1198 | OG0004212 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -30.952 AMFE: -0.569 GC content %: 54.424 | |
Obarthii_OBART01G16600.3 OBART01G16600.3 |
Low | No | 1183 | OG0004212 | Get ORF Coding potential... Type: noncoding Potential: -0.984 Folding energies... MFEI: -31.057 AMFE: -0.567 GC content %: 54.776 | |
Obarthii_OBART01G16600.4 OBART01G16600.4 |
Low | Yes | 2396 | OG0004212 | Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -30.405 AMFE: -0.675 GC content %: 45.033 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Obarthii_OBART01G16600.3 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Obarthii_OBART01G16600.1 | SwissProt | 2021-04-01 | P48732 | 5.86e-5 |
Obarthii_OBART01G16600.4 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm; DNA/TcMar-Stowaway; LTR/Gypsy | |
Obarthii_OBART01G16600.4 | SwissProt | 2021-04-01 | P48732 | 1.07e-5 |
Obarthii_OBART01G16600.4 | Rfam | 14.6 | MIR1122 | 1.8e-9 |
Obarthii_OBART01G16600.1 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm | |
Obarthii_OBART01G16600.2 | RepBase (RepeatMasker) | 2014-01-31 | DNA/CMC-EnSpm |