GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Obarthii_OBART01G16790 [ OBART01G16790]	1	14297113	14299922	v1	Oryza barthii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Obarthii_OBART01G16790.1 OBART01G16790.1	High	No	768	OG0052423		Get ORF Coding potential... Type: noncoding Potential: -0.089 Folding energies... MFEI: -32.812 AMFE: -0.648 GC content %: 50.651
Obarthii_OBART01G16790.2 OBART01G16790.2	High	No	694	OG0052423		Get ORF Coding potential... Type: noncoding Potential: -0.065 Folding energies... MFEI: -32.392 AMFE: -0.646 GC content %: 50.144

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).