Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Obarthii_OBART01G22540 [ OBART01G22540] |
1 | 19904103 | 19906790 | v1 | Oryza barthii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Obarthii_OBART01G22540.1 OBART01G22540.1 |
High | No | 668 | OG0240114 | Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -39.251 AMFE: -0.657 GC content %: 59.731 | |
Obarthii_OBART01G22540.2 OBART01G22540.2 |
High | No | 605 | OG0052436 | Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -43.058 AMFE: -0.687 GC content %: 62.645 | |
Obarthii_OBART01G22540.3 OBART01G22540.3 |
High | No | 1042 | OG0013614 | Get ORF Coding potential... Type: noncoding Potential: -0.991 Folding energies... MFEI: -34.779 AMFE: -0.685 GC content %: 50.768 |