Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Obarthii_OBART01G33890 [ OBART01G33890] |
1 | 28425842 | 28429579 | v1 | Oryza barthii (Ensembl Plants 51) | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Obarthii_OBART01G33890.1 OBART01G33890.1 |
High | No | 518 | OG0052453 | Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -29.942 AMFE: -0.489 GC content %: 61.197 | |
Obarthii_OBART01G33890.2 OBART01G33890.2 |
High | No | 842 | OG0003408 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -31.259 AMFE: -0.518 GC content %: 60.333 | |
Obarthii_OBART01G33890.3 OBART01G33890.3 |
High | No | 822 | OG0003408 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -30.462 AMFE: -0.508 GC content %: 59.976 | |
Obarthii_OBART01G33890.4 OBART01G33890.4 |
High | No | 509 | OG0052453 | Get ORF Coding potential... Type: noncoding Potential: -0.982 Folding energies... MFEI: -28.585 AMFE: -0.472 GC content %: 60.511 |