GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Obarthii_OBART04G08880 [ OBART04G08880]	4	10940162	10940973	v1	Oryza barthii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Obarthii_OBART04G08880.1 OBART04G08880.1	High	No	306	OG0241019		Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -33.366 AMFE: -0.577 GC content %: 57.843
Obarthii_OBART04G08880.2 OBART04G08880.2	High	No	201	OG0052621		Get ORF Coding potential... Type: noncoding Potential: -1.207 Folding energies... MFEI: -35.124 AMFE: -0.593 GC content %: 59.204

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).