GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Obarthii_OBART07G02590 [ OBART07G02590]	7	1980057	1987763	v1	Oryza barthii (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Obarthii_OBART07G02590.2 OBART07G02590.2	High	No	321	OG0052788		Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -35.701 AMFE: -0.703 GC content %: 50.779
Obarthii_OBART07G02590.3 OBART07G02590.3	High	No	321	OG0052788		Get ORF Coding potential... Type: noncoding Potential: -0.753 Folding energies... MFEI: -33.271 AMFE: -0.698 GC content %: 47.664

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).