GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Obarthii_OBART08G07260 [ OBART08G07260]	8	6472269	6474175	v1	Oryza barthii (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Obarthii_OBART08G07260.1 OBART08G07260.1	High	No	846	OG0000425		Get ORF Coding potential... Type: noncoding Potential: -0.841 Folding energies... MFEI: -26.915 AMFE: -0.508 GC content %: 52.955
Obarthii_OBART08G07260.2 OBART08G07260.2	High	No	558	OG0000425		Get ORF Coding potential... Type: noncoding Potential: -0.614 Folding energies... MFEI: -26.649 AMFE: -0.633 GC content %: 42.115

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).