Obrachyantha ENSRNA049461603

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Obrachyantha_ENSRNA049461603
[ ENSRNA049461603]
1 857366 857600 v1.4b Oryza brachyantha (Ensembl Plants 51)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Obrachyantha_ENSRNA049461603-T1
ENSRNA049461603-T1
Low Yes 235 OG0242963
Coding potential...
Type: noncoding Potential: -0.875
Folding energies...
MFEI: -38.298 AMFE: -0.833
GC content
%: 45.957


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Obrachyantha_ENSRNA049461603-T1  Rfam 14.6 MIR159 6.4e-29


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Obrachyantha_ENSRNA049461603.png