Oeuropaea Oeu000594.1

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Assembly Species Details

Oeuropaea_Oeu000594.1
[ Oeu000594.1]
scaffold1004 180410 180864 v1 Olea europaea (Phytozome 13)
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Orthologous group Sequence Details

Oeuropaea_Oeu000594.1
Oeu000594.1
Low No 309 OG0231020
Coding potential...
Type: noncoding Potential: -0.575
Folding energies...
MFEI: -26.311 AMFE: -0.569
GC content
%: 46.278


Matches to external databases
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The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.

Transcript alias Database Version Hit Evalue
Oeuropaea_Oeu000594.1  SwissProt 2021-04-01 Q56WF8 2.52e-27


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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