GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Oglumipatula_OGLUM01G01150 [ OGLUM01G01150]	1	912340	914995	v1.5	Oryza glumipatula (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Oglumipatula_OGLUM01G01150.1 OGLUM01G01150.1	High	No	669	OG0249687		Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -29.851 AMFE: -0.603 GC content %: 49.477
Oglumipatula_OGLUM01G01150.2 OGLUM01G01150.2	High	No	579	OG0249688		Get ORF Coding potential... Type: noncoding Potential: -0.911 Folding energies... MFEI: -30.328 AMFE: -0.593 GC content %: 51.123
Oglumipatula_OGLUM01G01150.3 OGLUM01G01150.3	High	No	528	OG0249689		Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -26.894 AMFE: -0.555 GC content %: 48.485

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).