Oglumipatula OGLUM01G02600
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Oglumipatula_OGLUM01G02600 [ OGLUM01G02600] |
1 | 2088455 | 2093017 | v1.5 | Oryza glumipatula (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Oglumipatula_OGLUM01G02600.1 OGLUM01G02600.1 |
High | No | 234 | OG0249700 | Get ORF Coding potential... Type: noncoding Potential: -0.796 Folding energies... MFEI: -30.427 AMFE: -0.565 GC content %: 53.846 | |
| Oglumipatula_OGLUM01G02600.2 OGLUM01G02600.2 |
High | No | 216 | OG0053582 | Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -36.481 AMFE: -0.620 GC content %: 58.796 | |
| Oglumipatula_OGLUM01G02600.3 OGLUM01G02600.3 |
High | No | 273 | OG0053582 | Get ORF Coding potential... Type: noncoding Potential: -1.218 Folding energies... MFEI: -33.553 AMFE: -0.603 GC content %: 55.678 | |
| Oglumipatula_OGLUM01G02600.4 OGLUM01G02600.4 |
High | No | 225 | OG0249701 | Get ORF Coding potential... Type: noncoding Potential: -0.900 Folding energies... MFEI: -27.689 AMFE: -0.542 GC content %: 51.111 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
