GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Oglumipatula_OGLUM01G43420 [ OGLUM01G43420]	1	41234079	41238007	v1.5	Oryza glumipatula (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Oglumipatula_OGLUM01G43420.1 OGLUM01G43420.1	High	No	276	OG0004219		Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -43.623 AMFE: -0.680 GC content %: 64.130
Oglumipatula_OGLUM01G43420.2 OGLUM01G43420.2	High	No	231	OG0004219		Get ORF Coding potential... Type: noncoding Potential: -0.950 Folding energies... MFEI: -43.636 AMFE: -0.720 GC content %: 60.606

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).