GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Oglumipatula_OGLUM02G08620 [ OGLUM02G08620]	2	6269347	6271737	v1.5	Oryza glumipatula (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Oglumipatula_OGLUM02G08620.1 OGLUM02G08620.1	High	No	928	OG0020628		Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -26.162 AMFE: -0.554 GC content %: 47.198
Oglumipatula_OGLUM02G08620.2 OGLUM02G08620.2	High	No	875	OG0020628		Get ORF Coding potential... Type: noncoding Potential: -0.800 Folding energies... MFEI: -26.857 AMFE: -0.565 GC content %: 47.543
Oglumipatula_OGLUM02G08620.3 OGLUM02G08620.3	High	No	1265	OG0020628		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -25.572 AMFE: -0.590 GC content %: 43.320

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).