Oglumipatula OGLUM02G12720
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Oglumipatula_OGLUM02G12720 [ OGLUM02G12720] |
2 | 10908204 | 10944987 | v1.5 | Oryza glumipatula (Ensembl Plants 51) | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Oglumipatula_OGLUM02G12720.10 OGLUM02G12720.10 |
High | No | 355 | OG0001776 | Get ORF Coding potential... Type: noncoding Potential: -1.201 Folding energies... MFEI: -48.000 AMFE: -0.690 GC content %: 69.577 | |
| Oglumipatula_OGLUM02G12720.12 OGLUM02G12720.12 |
Low | No | 4153 | OG0001776 | Get ORF Coding potential... Type: coding Potential: 3.392 Folding energies... MFEI: -31.901 AMFE: -0.669 GC content %: 47.652 | |
| Oglumipatula_OGLUM02G12720.7 OGLUM02G12720.7 |
High | No | 1355 | OG0001776 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -31.951 AMFE: -0.652 GC content %: 49.004 | |
| Oglumipatula_OGLUM02G12720.9 OGLUM02G12720.9 |
High | No | 325 | OG0001776 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -50.092 AMFE: -0.699 GC content %: 71.692 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
