Oglumipatula OGLUM03G19450
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
|---|---|---|---|---|---|---|
| Oglumipatula_OGLUM03G19450 [ OGLUM03G19450] |
3 | 15253870 | 15258205 | v1.5 | Oryza glumipatula (Ensembl Plants 51) | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
|---|---|---|---|---|---|---|
| Oglumipatula_OGLUM03G19450.1 OGLUM03G19450.1 |
High | No | 282 | OG0004244 | Get ORF Coding potential... Type: noncoding Potential: -0.027 Folding energies... MFEI: -27.801 AMFE: -0.512 GC content %: 54.255 | |
| Oglumipatula_OGLUM03G19450.2 OGLUM03G19450.2 |
High | No | 264 | OG0004244 | Get ORF Coding potential... Type: noncoding Potential: -0.411 Folding energies... MFEI: -32.614 AMFE: -0.574 GC content %: 56.818 | |
| Oglumipatula_OGLUM03G19450.3 OGLUM03G19450.3 |
High | No | 270 | OG0004244 | Get ORF Coding potential... Type: noncoding Potential: -0.030 Folding energies... MFEI: -29.481 AMFE: -0.565 GC content %: 52.222 | |
| Oglumipatula_OGLUM03G19450.4 OGLUM03G19450.4 |
High | No | 273 | OG0250626 | Get ORF Coding potential... Type: noncoding Potential: -0.458 Folding energies... MFEI: -38.352 AMFE: -0.518 GC content %: 73.993 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
