GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Oglumipatula_OGLUM03G22670 [ OGLUM03G22670]	3	18705182	18714562	v1.5	Oryza glumipatula (Ensembl Plants 51)	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Oglumipatula_OGLUM03G22670.7 OGLUM03G22670.7	High	No	387	OG0250657		Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -26.486 AMFE: -0.542 GC content %: 48.837
Oglumipatula_OGLUM03G22670.8 OGLUM03G22670.8	High	No	336	OG0250658		Get ORF Coding potential... Type: noncoding Potential: -0.922 Folding energies... MFEI: -25.565 AMFE: -0.401 GC content %: 63.690

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).