GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Oglumipatula_OGLUM04G02730 [ OGLUM04G02730]	4	3998816	3999563	v1.5	Oryza glumipatula (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Oglumipatula_OGLUM04G02730.1 OGLUM04G02730.1	High	No	267	OG0053733		Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -26.030 AMFE: -0.579 GC content %: 44.944
Oglumipatula_OGLUM04G02730.2 OGLUM04G02730.2	High	No	345	OG0250843		Get ORF Coding potential... Type: noncoding Potential: -0.456 Folding energies... MFEI: -26.345 AMFE: -0.508 GC content %: 51.884

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).