GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Assembly	Species	Details
Oglumipatula_OGLUM04G27390 [ OGLUM04G27390]	4	30219014	30219589	v1.5	Oryza glumipatula (Ensembl Plants 51)	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Orthologous group	Sequence	Details
Oglumipatula_OGLUM04G27390.1 OGLUM04G27390.1	High	No	276	OG0053764		Get ORF Coding potential... Type: noncoding Potential: -0.517 Folding energies... MFEI: -23.297 AMFE: -0.487 GC content %: 47.826
Oglumipatula_OGLUM04G27390.2 OGLUM04G27390.2	High	No	204	OG0053764		Get ORF Coding potential... Type: noncoding Potential: -0.785 Folding energies... MFEI: -24.608 AMFE: -0.523 GC content %: 47.059

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).