Gene alias / name | Chrom. | Start | End | Assembly | Species | Details
|
---|---|---|---|---|---|---|
Oglumipatula_OGLUM06G00200 [ OGLUM06G00200] |
6 | 148160 | 157468 | v1.5 | Oryza glumipatula (Ensembl Plants 51) | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Orthologous group | Sequence | Details
|
---|---|---|---|---|---|---|
Oglumipatula_OGLUM06G00200.2 OGLUM06G00200.2 |
Low | No | 1638 | OG0251345 | Get ORF Coding potential... Type: coding Potential: 0.982 Folding energies... MFEI: -35.067 AMFE: -0.694 GC content %: 50.549 | |
Oglumipatula_OGLUM06G00200.3 OGLUM06G00200.3 |
Low | No | 1891 | OG0251346 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -32.311 AMFE: -0.703 GC content %: 45.955 | |
Oglumipatula_OGLUM06G00200.4 OGLUM06G00200.4 |
Low | No | 267 | OG0020705 | Get ORF Coding potential... Type: coding Potential: 0.465 Folding energies... MFEI: -33.783 AMFE: -0.614 GC content %: 55.056 | |
Oglumipatula_OGLUM06G00200.6 OGLUM06G00200.6 |
Low | No | 1043 | OG0053806 | Get ORF Coding potential... Type: noncoding Potential: -0.745 Folding energies... MFEI: -31.601 AMFE: -0.685 GC content %: 46.117 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Oglumipatula_OGLUM06G00200.6 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia; LTR/Pao | |
Oglumipatula_OGLUM06G00200.2 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia; LTR/Pao | |
Oglumipatula_OGLUM06G00200.3 | RepBase (RepeatMasker) | 2014-01-31 | LTR/Copia; LTR/Pao |